10/23/2023 02:29:03 PM - humann.humann - INFO: Running humann v3.8 10/23/2023 02:29:03 PM - humann.humann - INFO: Output files will be written to: /home/hassan/Desktop/bouy/withoutbypass 10/23/2023 02:29:03 PM - humann.humann - INFO: Writing temp files to directory: /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp 10/23/2023 02:29:03 PM - humann.utilities - INFO: File ( /home/hassan/Desktop/bouy/062615a_S9_L001_R1_001.fastq.gz ) is of format: fastq.gz 10/23/2023 02:29:03 PM - humann.utilities - INFO: Decompressing gzipped file ... 10/23/2023 02:29:05 PM - humann.humann - INFO: Removing spaces from identifiers in input file 10/23/2023 02:29:06 PM - humann.utilities - DEBUG: Check software, metaphlan, for required version, 3.0 10/23/2023 02:29:08 PM - humann.utilities - INFO: Using metaphlan version 4.0 10/23/2023 02:29:08 PM - humann.utilities - DEBUG: Check software, bowtie2, for required version, 2.2 10/23/2023 02:29:08 PM - humann.utilities - INFO: Using bowtie2 version 2.5 10/23/2023 02:29:08 PM - humann.humann - INFO: Search mode set to uniref50 because a uniref50 translated search database is selected 10/23/2023 02:29:08 PM - humann.utilities - DEBUG: Check software, diamond, for required version, 2.0.15 10/23/2023 02:29:08 PM - humann.utilities - INFO: Using diamond version 2.1.8 10/23/2023 02:29:08 PM - humann.config - INFO: Run config settings: DATABASE SETTINGS nucleotide database folder = /home/hassan/Desktop/hdatabases/chocophlan protein database folder = /home/hassan/Desktop/hdatabases/uniref50 pathways database file 1 = /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 pathways database file 2 = /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/data/pathways/metacyc_pathways_structured_filtered_v24_subreactions utility mapping database folder = /home/hassan/Desktop/b/utility_mapping RUN MODES resume = False verbose = False bypass prescreen = False bypass nucleotide index = False bypass nucleotide search = False bypass translated search = False translated search = diamond threads = 45 SEARCH MODE search mode = uniref50 nucleotide identity threshold = 0.0 translated identity threshold = 50.0 ALIGNMENT SETTINGS bowtie2 options = --very-sensitive diamond options = --top 1 --sensitive --outfmt 6 evalue threshold = 1.0 prescreen threshold = 0.01 translated subject coverage threshold = 50.0 translated query coverage threshold = 90.0 nucleotide subject coverage threshold = 50.0 nucleotide query coverage threshold = 90.0 PATHWAYS SETTINGS minpath = on xipe = off gap fill = on INPUT AND OUTPUT FORMATS input file format = fastq.gz output file format = tsv output max decimals = 10 remove stratified output = False remove column description output = False log level = DEBUG 10/23/2023 02:29:08 PM - humann.store - DEBUG: Initialize Alignments class instance to maximize memory use 10/23/2023 02:29:08 PM - humann.store - DEBUG: Initialize Reads class instance to maximize memory use 10/23/2023 02:29:26 PM - humann.humann - INFO: Load pathways database part 1: /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 10/23/2023 02:29:26 PM - humann.humann - INFO: Load pathways database part 2: /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/data/pathways/metacyc_pathways_structured_filtered_v24_subreactions 10/23/2023 02:29:26 PM - humann.search.prescreen - INFO: Running metaphlan ........ 10/23/2023 02:29:26 PM - humann.utilities - DEBUG: Using software: /home/hassan/miniconda3/envs/humann_env/bin/metaphlan 10/23/2023 02:29:26 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/metaphlan /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmp8dlbw4gl -t rel_ab -o /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_metaphlan_bugs_list.tsv --input_type fastq --bowtie2out /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_metaphlan_bowtie2.txt --nproc 45 10/23/2023 02:31:22 PM - humann.utilities - DEBUG: b'WARNING: The metagenome profile contains clades that represent multiple species merged into a single representant.\nAn additional column listing the merged species is added to the MetaPhlAn output.\n' 10/23/2023 02:31:22 PM - humann.humann - INFO: TIMESTAMP: Completed prescreen : 116 seconds 10/23/2023 02:31:22 PM - humann.search.prescreen - INFO: Found t__SGB24760 : 100.00% of mapped reads ( s__Anabaena_sp_CRKS33,g__Dolichospermum.s__Dolichospermum_planctonicum,g__Dolichospermum.s__Dolichospermum_flos_aquae,g__Dolichospermum.s__Dolichospermum_sp_FACHB_1091,g__Anabaena.s__Anabaena_sp_FACHB_1250,g__Anabaena.s__Anabaena_sp_FACHB_1391 ) 10/23/2023 02:31:22 PM - humann.search.prescreen - INFO: Total species selected from prescreen: 7 10/23/2023 02:31:22 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Anabaena.s__Anabaena_sp_CRKS33.centroids.v201901_v31.ffn.gz 10/23/2023 02:31:22 PM - humann.search.prescreen - INFO: Creating custom ChocoPhlAn database ........ 10/23/2023 02:31:22 PM - humann.utilities - DEBUG: Using software: /usr/bin/gunzip 10/23/2023 02:31:22 PM - humann.utilities - INFO: Execute command: /usr/bin/gunzip -c /home/hassan/Desktop/hdatabases/chocophlan/g__Anabaena.s__Anabaena_sp_CRKS33.centroids.v201901_v31.ffn.gz 10/23/2023 02:31:22 PM - humann.humann - INFO: TIMESTAMP: Completed custom database creation : 1 seconds 10/23/2023 02:31:22 PM - humann.search.nucleotide - INFO: Running bowtie2-build ........ 10/23/2023 02:31:22 PM - humann.utilities - DEBUG: Using software: /home/hassan/miniconda3/envs/humann_env/bin/bowtie2-build 10/23/2023 02:31:22 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/bowtie2-build -f /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_custom_chocophlan_database.ffn /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_bowtie2_index 10/23/2023 02:31:26 PM - humann.humann - INFO: TIMESTAMP: Completed database index : 4 seconds 10/23/2023 02:31:26 PM - humann.search.nucleotide - DEBUG: Nucleotide input file is of type: fastq 10/23/2023 02:31:26 PM - humann.utilities - DEBUG: Using software: /home/hassan/miniconda3/envs/humann_env/bin/bowtie2 10/23/2023 02:31:26 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/bowtie2 -q -x /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_bowtie2_index -U /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmp8dlbw4gl -S /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_bowtie2_aligned.sam -p 45 --very-sensitive 10/23/2023 02:31:29 PM - humann.utilities - DEBUG: b'267336 reads; of these:\n 267336 (100.00%) were unpaired; of these:\n 258840 (96.82%) aligned 0 times\n 8438 (3.16%) aligned exactly 1 time\n 58 (0.02%) aligned >1 times\n3.18% overall alignment rate\n' 10/23/2023 02:31:29 PM - humann.humann - INFO: TIMESTAMP: Completed nucleotide alignment : 3 seconds 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments where percent identity is not a number: 0 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments where alignment length is not a number: 0 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments where E-value is not a number: 0 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments not included based on large e-value: 0 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments not included based on small percent identity: 0 10/23/2023 02:31:33 PM - humann.utilities - DEBUG: Total alignments not included based on small query coverage: 0 10/23/2023 02:31:33 PM - humann.search.blastx_coverage - INFO: Total alignments without coverage information: 0 10/23/2023 02:31:33 PM - humann.search.blastx_coverage - INFO: Total proteins in blastx output: 1221 10/23/2023 02:31:33 PM - humann.search.blastx_coverage - INFO: Total proteins without lengths: 0 10/23/2023 02:31:33 PM - humann.search.blastx_coverage - INFO: Proteins with coverage greater than threshold (50.0): 549 10/23/2023 02:31:35 PM - humann.search.nucleotide - DEBUG: Total nucleotide alignments not included based on filtered genes: 1044 10/23/2023 02:31:35 PM - humann.search.nucleotide - DEBUG: Total nucleotide alignments not included based on small percent identities: 0 10/23/2023 02:31:35 PM - humann.search.nucleotide - DEBUG: Total nucleotide alignments not included based on query coverage threshold: 0 10/23/2023 02:31:35 PM - humann.search.nucleotide - DEBUG: Keeping sam file 10/23/2023 02:31:35 PM - humann.humann - INFO: TIMESTAMP: Completed nucleotide alignment post-processing : 6 seconds 10/23/2023 02:31:35 PM - humann.humann - INFO: Total bugs from nucleotide alignment: 1 10/23/2023 02:31:35 PM - humann.humann - INFO: g__Anabaena.s__Anabaena_sp_CRKS33: 7452 hits 10/23/2023 02:31:35 PM - humann.humann - INFO: Total gene families from nucleotide alignment: 549 10/23/2023 02:31:35 PM - humann.humann - INFO: Unaligned reads after nucleotide alignment: 97.2124966335 % 10/23/2023 02:31:35 PM - humann.search.translated - INFO: Running diamond ........ 10/23/2023 02:31:35 PM - humann.search.translated - INFO: Aligning to reference database: uniref50_201901b_full.dmnd 10/23/2023 02:31:35 PM - humann.utilities - DEBUG: Remove file: /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/diamond_m8_i7fs464h 10/23/2023 02:31:35 PM - humann.utilities - DEBUG: Using software: /home/hassan/miniconda3/envs/humann_env/bin/diamond 10/23/2023 02:31:35 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/diamond blastx --query /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/062615a_S9_L001_R1_001_bowtie2_unaligned.fa --evalue 1.0 --threads 45 --top 1 --sensitive --outfmt 6 --db /home/hassan/Desktop/hdatabases/uniref50/uniref50_201901b_full --out /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/diamond_m8_i7fs464h --tmpdir /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2 10/23/2023 02:50:42 PM - humann.utilities - DEBUG: b'diamond v2.1.8.162 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen\nDocumentation, support and updates available at http://www.diamondsearch.org\nPlease cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)\n\n#CPU threads: 45\nScoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)\nTemporary directory: /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2\nPercentage range of top alignment score to report hits: 1\nOpening the database... [0.127s]\nDatabase: /home/hassan/Desktop/hdatabases/uniref50/uniref50_201901b_full (type: Diamond database, sequences: 32474829, letters: 9843106304)\nBlock size = 2000000000\nOpening the input file... [0.044s]\nOpening the output file... [0s]\nLoading query sequences... [1.49s]\nMasking queries... [0.66s]\nAlgorithm: Double-indexed\nBuilding query histograms... [0.703s]\nSeeking in database... [0s]\nLoading reference sequences... [4.831s]\nMasking reference... [5.552s]\nInitializing dictionary... [0.019s]\nInitializing temporary storage... [0s]\nBuilding reference histograms... [12.638s]\nAllocating buffers... [0.017s]\nProcessing query block 1, reference block 1/5, shape 1/16, index chunk 1/4.\nBuilding reference seed array... [1.813s]\nBuilding query seed array... [0.096s]\nComputing hash join... [0.449s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.919s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 1/16, index chunk 2/4.\nBuilding reference seed array... [1.866s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.423s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.833s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 1/16, index chunk 3/4.\nBuilding reference seed array... [1.904s]\nBuilding query seed array... [0.092s]\nComputing hash join... [0.425s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.842s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 1/16, index chunk 4/4.\nBuilding reference seed array... [1.619s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.412s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.835s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 2/16, index chunk 1/4.\nBuilding reference seed array... [1.697s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.792s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 2/16, index chunk 2/4.\nBuilding reference seed array... [1.804s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.824s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 2/16, index chunk 3/4.\nBuilding reference seed array... [1.941s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.805s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 2/16, index chunk 4/4.\nBuilding reference seed array... [1.651s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.753s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 3/16, index chunk 1/4.\nBuilding reference seed array... [1.713s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.417s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.825s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 3/16, index chunk 2/4.\nBuilding reference seed array... [1.8s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.414s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.837s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 3/16, index chunk 3/4.\nBuilding reference seed array... [1.865s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.856s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 3/16, index chunk 4/4.\nBuilding reference seed array... [1.679s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.416s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.914s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 4/16, index chunk 1/4.\nBuilding reference seed array... [1.742s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.414s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.848s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 4/16, index chunk 2/4.\nBuilding reference seed array... [1.808s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.816s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 4/16, index chunk 3/4.\nBuilding reference seed array... [1.919s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.82s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 4/16, index chunk 4/4.\nBuilding reference seed array... [1.69s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.837s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 5/16, index chunk 1/4.\nBuilding reference seed array... [1.793s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.406s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.829s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 5/16, index chunk 2/4.\nBuilding reference seed array... [1.826s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.804s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 5/16, index chunk 3/4.\nBuilding reference seed array... [1.855s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.774s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 5/16, index chunk 4/4.\nBuilding reference seed array... [1.586s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.806s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 6/16, index chunk 1/4.\nBuilding reference seed array... [1.681s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.845s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 6/16, index chunk 2/4.\nBuilding reference seed array... [1.787s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.816s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 6/16, index chunk 3/4.\nBuilding reference seed array... [1.83s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.787s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 6/16, index chunk 4/4.\nBuilding reference seed array... [1.63s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.791s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 7/16, index chunk 1/4.\nBuilding reference seed array... [1.738s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.808s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 7/16, index chunk 2/4.\nBuilding reference seed array... [1.822s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.749s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 7/16, index chunk 3/4.\nBuilding reference seed array... [1.78s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.741s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 7/16, index chunk 4/4.\nBuilding reference seed array... [1.648s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.772s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 8/16, index chunk 1/4.\nBuilding reference seed array... [1.775s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.799s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 8/16, index chunk 2/4.\nBuilding reference seed array... [1.79s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.842s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 8/16, index chunk 3/4.\nBuilding reference seed array... [1.778s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.775s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 8/16, index chunk 4/4.\nBuilding reference seed array... [1.595s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.758s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 9/16, index chunk 1/4.\nBuilding reference seed array... [1.69s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.821s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 9/16, index chunk 2/4.\nBuilding reference seed array... [1.775s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.819s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 9/16, index chunk 3/4.\nBuilding reference seed array... [1.885s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.799s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 9/16, index chunk 4/4.\nBuilding reference seed array... [1.699s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.418s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.82s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 10/16, index chunk 1/4.\nBuilding reference seed array... [1.702s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.77s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 10/16, index chunk 2/4.\nBuilding reference seed array... [1.853s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.75s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 10/16, index chunk 3/4.\nBuilding reference seed array... [1.845s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.759s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 10/16, index chunk 4/4.\nBuilding reference seed array... [1.638s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.761s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 11/16, index chunk 1/4.\nBuilding reference seed array... [1.686s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.406s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.786s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 11/16, index chunk 2/4.\nBuilding reference seed array... [1.83s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.807s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 11/16, index chunk 3/4.\nBuilding reference seed array... [1.932s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.83s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 11/16, index chunk 4/4.\nBuilding reference seed array... [1.674s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 12/16, index chunk 1/4.\nBuilding reference seed array... [1.725s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.805s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 12/16, index chunk 2/4.\nBuilding reference seed array... [1.866s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.793s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 12/16, index chunk 3/4.\nBuilding reference seed array... [1.879s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.795s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 12/16, index chunk 4/4.\nBuilding reference seed array... [1.671s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.968s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 13/16, index chunk 1/4.\nBuilding reference seed array... [1.852s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 13/16, index chunk 2/4.\nBuilding reference seed array... [1.858s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.835s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 13/16, index chunk 3/4.\nBuilding reference seed array... [1.817s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.758s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 13/16, index chunk 4/4.\nBuilding reference seed array... [1.467s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.382s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.751s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 14/16, index chunk 1/4.\nBuilding reference seed array... [1.727s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.831s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 14/16, index chunk 2/4.\nBuilding reference seed array... [1.806s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.769s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 14/16, index chunk 3/4.\nBuilding reference seed array... [1.8s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.757s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 14/16, index chunk 4/4.\nBuilding reference seed array... [1.605s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.774s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 15/16, index chunk 1/4.\nBuilding reference seed array... [1.703s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.805s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 15/16, index chunk 2/4.\nBuilding reference seed array... [1.792s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.829s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 15/16, index chunk 3/4.\nBuilding reference seed array... [1.899s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.836s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 15/16, index chunk 4/4.\nBuilding reference seed array... [1.697s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.852s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 16/16, index chunk 1/4.\nBuilding reference seed array... [1.734s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.74s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 16/16, index chunk 2/4.\nBuilding reference seed array... [1.797s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.747s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 16/16, index chunk 3/4.\nBuilding reference seed array... [1.784s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.759s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 1/5, shape 16/16, index chunk 4/4.\nBuilding reference seed array... [1.477s]\nBuilding query seed array... [0.078s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.736s]\nDeallocating memory... [0s]\nDeallocating buffers... [0.423s]\nClearing query masking... [0.03s]\nOpening temporary output file... [0s]\nComputing alignments... Loading trace points... [3.449s]\nSorting trace points... [0.56s]\nComputing alignments... [7.198s]\nDeallocating buffers... [0.095s]\nLoading trace points... [0s]\n [11.554s]\nDeallocating reference... [0.139s]\nLoading reference sequences... [4.105s]\nMasking reference... [5.544s]\nInitializing dictionary... [0.019s]\nInitializing temporary storage... [0s]\nBuilding reference histograms... [13.363s]\nAllocating buffers... [0.006s]\nProcessing query block 1, reference block 2/5, shape 1/16, index chunk 1/4.\nBuilding reference seed array... [1.971s]\nBuilding query seed array... [0.094s]\nComputing hash join... [0.419s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.914s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 1/16, index chunk 2/4.\nBuilding reference seed array... [1.85s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.42s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.851s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 1/16, index chunk 3/4.\nBuilding reference seed array... [1.833s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.42s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.826s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 1/16, index chunk 4/4.\nBuilding reference seed array... [1.554s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.413s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.852s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 2/16, index chunk 1/4.\nBuilding reference seed array... [1.725s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.784s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 2/16, index chunk 2/4.\nBuilding reference seed array... [1.812s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.779s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 2/16, index chunk 3/4.\nBuilding reference seed array... [1.813s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.776s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 2/16, index chunk 4/4.\nBuilding reference seed array... [1.671s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.784s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 3/16, index chunk 1/4.\nBuilding reference seed array... [1.738s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.844s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 3/16, index chunk 2/4.\nBuilding reference seed array... [1.83s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.836s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 3/16, index chunk 3/4.\nBuilding reference seed array... [1.858s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.414s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.886s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 3/16, index chunk 4/4.\nBuilding reference seed array... [1.589s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.426s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.923s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 4/16, index chunk 1/4.\nBuilding reference seed array... [1.758s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.853s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 4/16, index chunk 2/4.\nBuilding reference seed array... [1.886s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.415s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.853s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 4/16, index chunk 3/4.\nBuilding reference seed array... [1.826s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.843s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 4/16, index chunk 4/4.\nBuilding reference seed array... [1.61s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.414s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.811s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 5/16, index chunk 1/4.\nBuilding reference seed array... [1.718s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.404s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.791s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 5/16, index chunk 2/4.\nBuilding reference seed array... [1.788s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.801s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 5/16, index chunk 3/4.\nBuilding reference seed array... [1.874s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.787s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 5/16, index chunk 4/4.\nBuilding reference seed array... [1.635s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.843s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 6/16, index chunk 1/4.\nBuilding reference seed array... [1.777s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.418s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.829s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 6/16, index chunk 2/4.\nBuilding reference seed array... [1.958s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.416s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.83s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 6/16, index chunk 3/4.\nBuilding reference seed array... [1.954s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.812s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 6/16, index chunk 4/4.\nBuilding reference seed array... [1.618s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.415s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.824s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 7/16, index chunk 1/4.\nBuilding reference seed array... [1.63s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.779s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 7/16, index chunk 2/4.\nBuilding reference seed array... [1.749s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 7/16, index chunk 3/4.\nBuilding reference seed array... [1.851s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.796s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 7/16, index chunk 4/4.\nBuilding reference seed array... [1.632s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.812s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 8/16, index chunk 1/4.\nBuilding reference seed array... [1.706s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.783s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 8/16, index chunk 2/4.\nBuilding reference seed array... [1.841s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.415s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.813s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 8/16, index chunk 3/4.\nBuilding reference seed array... [1.887s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.804s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 8/16, index chunk 4/4.\nBuilding reference seed array... [1.625s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.774s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 9/16, index chunk 1/4.\nBuilding reference seed array... [1.732s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.827s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 9/16, index chunk 2/4.\nBuilding reference seed array... [1.824s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.407s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.937s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 9/16, index chunk 3/4.\nBuilding reference seed array... [1.866s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.812s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 9/16, index chunk 4/4.\nBuilding reference seed array... [1.636s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.847s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 10/16, index chunk 1/4.\nBuilding reference seed array... [1.703s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.751s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 10/16, index chunk 2/4.\nBuilding reference seed array... [1.774s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.761s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 10/16, index chunk 3/4.\nBuilding reference seed array... [1.833s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.762s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 10/16, index chunk 4/4.\nBuilding reference seed array... [1.577s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.788s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 11/16, index chunk 1/4.\nBuilding reference seed array... [1.707s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.419s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.818s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 11/16, index chunk 2/4.\nBuilding reference seed array... [1.803s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.817s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 11/16, index chunk 3/4.\nBuilding reference seed array... [1.844s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.84s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 11/16, index chunk 4/4.\nBuilding reference seed array... [1.618s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.407s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.86s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 12/16, index chunk 1/4.\nBuilding reference seed array... [1.694s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.797s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 12/16, index chunk 2/4.\nBuilding reference seed array... [1.798s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.773s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 12/16, index chunk 3/4.\nBuilding reference seed array... [1.873s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.82s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 12/16, index chunk 4/4.\nBuilding reference seed array... [1.636s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.86s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 13/16, index chunk 1/4.\nBuilding reference seed array... [1.714s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.916s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 13/16, index chunk 2/4.\nBuilding reference seed array... [1.863s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.772s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 13/16, index chunk 3/4.\nBuilding reference seed array... [1.79s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.775s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 13/16, index chunk 4/4.\nBuilding reference seed array... [1.664s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.385s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.779s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 14/16, index chunk 1/4.\nBuilding reference seed array... [1.684s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.795s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 14/16, index chunk 2/4.\nBuilding reference seed array... [1.875s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.778s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 14/16, index chunk 3/4.\nBuilding reference seed array... [1.904s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.778s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 14/16, index chunk 4/4.\nBuilding reference seed array... [1.688s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.749s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 15/16, index chunk 1/4.\nBuilding reference seed array... [1.706s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.413s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.807s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 15/16, index chunk 2/4.\nBuilding reference seed array... [1.766s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.829s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 15/16, index chunk 3/4.\nBuilding reference seed array... [1.836s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.808s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 15/16, index chunk 4/4.\nBuilding reference seed array... [1.29s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.784s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 16/16, index chunk 1/4.\nBuilding reference seed array... [1.645s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.794s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 16/16, index chunk 2/4.\nBuilding reference seed array... [1.853s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 16/16, index chunk 3/4.\nBuilding reference seed array... [1.895s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.834s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 2/5, shape 16/16, index chunk 4/4.\nBuilding reference seed array... [1.578s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.773s]\nDeallocating memory... [0s]\nDeallocating buffers... [0.339s]\nClearing query masking... [0.02s]\nOpening temporary output file... [0s]\nComputing alignments... Loading trace points... [3.443s]\nSorting trace points... [0.576s]\nComputing alignments... [7.188s]\nDeallocating buffers... [0.094s]\nLoading trace points... [0s]\n [11.483s]\nDeallocating reference... [0.14s]\nLoading reference sequences... [5.031s]\nMasking reference... [5.536s]\nInitializing dictionary... [0.025s]\nInitializing temporary storage... [0s]\nBuilding reference histograms... [13.337s]\nAllocating buffers... [0.006s]\nProcessing query block 1, reference block 3/5, shape 1/16, index chunk 1/4.\nBuilding reference seed array... [1.936s]\nBuilding query seed array... [0.092s]\nComputing hash join... [0.429s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.964s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 1/16, index chunk 2/4.\nBuilding reference seed array... [1.884s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.413s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.854s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 1/16, index chunk 3/4.\nBuilding reference seed array... [1.835s]\nBuilding query seed array... [0.094s]\nComputing hash join... [0.427s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.846s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 1/16, index chunk 4/4.\nBuilding reference seed array... [1.628s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.415s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.842s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 2/16, index chunk 1/4.\nBuilding reference seed array... [1.694s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 2/16, index chunk 2/4.\nBuilding reference seed array... [1.753s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.392s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.775s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 2/16, index chunk 3/4.\nBuilding reference seed array... [1.882s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.827s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 2/16, index chunk 4/4.\nBuilding reference seed array... [1.703s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.767s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 3/16, index chunk 1/4.\nBuilding reference seed array... [1.68s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.418s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.878s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 3/16, index chunk 2/4.\nBuilding reference seed array... [1.79s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.82s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 3/16, index chunk 3/4.\nBuilding reference seed array... [1.818s]\nBuilding query seed array... [0.093s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.873s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 3/16, index chunk 4/4.\nBuilding reference seed array... [1.686s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.415s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.867s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 4/16, index chunk 1/4.\nBuilding reference seed array... [1.708s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.814s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 4/16, index chunk 2/4.\nBuilding reference seed array... [1.77s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.413s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.823s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 4/16, index chunk 3/4.\nBuilding reference seed array... [1.866s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.412s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.851s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 4/16, index chunk 4/4.\nBuilding reference seed array... [1.668s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.799s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 5/16, index chunk 1/4.\nBuilding reference seed array... [1.733s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 5/16, index chunk 2/4.\nBuilding reference seed array... [1.862s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.795s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 5/16, index chunk 3/4.\nBuilding reference seed array... [1.8s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.812s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 5/16, index chunk 4/4.\nBuilding reference seed array... [1.598s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.416s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.8s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 6/16, index chunk 1/4.\nBuilding reference seed array... [1.721s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.404s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.828s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 6/16, index chunk 2/4.\nBuilding reference seed array... [1.778s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.806s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 6/16, index chunk 3/4.\nBuilding reference seed array... [1.869s]\nBuilding query seed array... [0.092s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 6/16, index chunk 4/4.\nBuilding reference seed array... [1.631s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.792s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 7/16, index chunk 1/4.\nBuilding reference seed array... [1.733s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.781s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 7/16, index chunk 2/4.\nBuilding reference seed array... [1.821s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.406s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.809s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 7/16, index chunk 3/4.\nBuilding reference seed array... [1.834s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.772s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 7/16, index chunk 4/4.\nBuilding reference seed array... [1.584s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.799s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 8/16, index chunk 1/4.\nBuilding reference seed array... [1.729s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.772s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 8/16, index chunk 2/4.\nBuilding reference seed array... [1.809s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.782s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 8/16, index chunk 3/4.\nBuilding reference seed array... [1.863s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.392s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.797s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 8/16, index chunk 4/4.\nBuilding reference seed array... [1.68s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.818s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 9/16, index chunk 1/4.\nBuilding reference seed array... [1.742s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.839s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 9/16, index chunk 2/4.\nBuilding reference seed array... [1.754s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.945s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 9/16, index chunk 3/4.\nBuilding reference seed array... [1.993s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.844s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 9/16, index chunk 4/4.\nBuilding reference seed array... [1.703s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.411s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.867s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 10/16, index chunk 1/4.\nBuilding reference seed array... [1.693s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.385s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.757s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 10/16, index chunk 2/4.\nBuilding reference seed array... [1.819s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.743s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 10/16, index chunk 3/4.\nBuilding reference seed array... [1.793s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.765s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 10/16, index chunk 4/4.\nBuilding reference seed array... [1.573s]\nBuilding query seed array... [0.078s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.804s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 11/16, index chunk 1/4.\nBuilding reference seed array... [1.726s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.402s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.807s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 11/16, index chunk 2/4.\nBuilding reference seed array... [1.878s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.407s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.847s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 11/16, index chunk 3/4.\nBuilding reference seed array... [1.87s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.404s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.807s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 11/16, index chunk 4/4.\nBuilding reference seed array... [1.599s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.822s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 12/16, index chunk 1/4.\nBuilding reference seed array... [1.678s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.827s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 12/16, index chunk 2/4.\nBuilding reference seed array... [1.859s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.855s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 12/16, index chunk 3/4.\nBuilding reference seed array... [1.855s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.382s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.797s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 12/16, index chunk 4/4.\nBuilding reference seed array... [1.691s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.886s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 13/16, index chunk 1/4.\nBuilding reference seed array... [1.759s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.381s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.859s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 13/16, index chunk 2/4.\nBuilding reference seed array... [1.762s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.874s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 13/16, index chunk 3/4.\nBuilding reference seed array... [1.854s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.797s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 13/16, index chunk 4/4.\nBuilding reference seed array... [1.665s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.803s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 14/16, index chunk 1/4.\nBuilding reference seed array... [1.796s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.763s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 14/16, index chunk 2/4.\nBuilding reference seed array... [1.774s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.385s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.773s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 14/16, index chunk 3/4.\nBuilding reference seed array... [1.756s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.774s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 14/16, index chunk 4/4.\nBuilding reference seed array... [1.674s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.767s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 15/16, index chunk 1/4.\nBuilding reference seed array... [1.782s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.809s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 15/16, index chunk 2/4.\nBuilding reference seed array... [1.813s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.817s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 15/16, index chunk 3/4.\nBuilding reference seed array... [1.794s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.857s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 15/16, index chunk 4/4.\nBuilding reference seed array... [1.596s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.787s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 16/16, index chunk 1/4.\nBuilding reference seed array... [1.684s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 16/16, index chunk 2/4.\nBuilding reference seed array... [1.816s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.761s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 16/16, index chunk 3/4.\nBuilding reference seed array... [1.835s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.773s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 3/5, shape 16/16, index chunk 4/4.\nBuilding reference seed array... [1.7s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.791s]\nDeallocating memory... [0s]\nDeallocating buffers... [0.343s]\nClearing query masking... [0.019s]\nOpening temporary output file... [0s]\nComputing alignments... Loading trace points... [3.367s]\nSorting trace points... [0.563s]\nComputing alignments... [7.192s]\nDeallocating buffers... [0.09s]\nLoading trace points... [0s]\n [11.386s]\nDeallocating reference... [0.139s]\nLoading reference sequences... [3.943s]\nMasking reference... [5.555s]\nInitializing dictionary... [0.023s]\nInitializing temporary storage... [0s]\nBuilding reference histograms... [13.462s]\nAllocating buffers... [0.006s]\nProcessing query block 1, reference block 4/5, shape 1/16, index chunk 1/4.\nBuilding reference seed array... [1.967s]\nBuilding query seed array... [0.094s]\nComputing hash join... [0.419s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.95s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 1/16, index chunk 2/4.\nBuilding reference seed array... [1.839s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.413s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.845s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 1/16, index chunk 3/4.\nBuilding reference seed array... [1.797s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.41s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.838s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 1/16, index chunk 4/4.\nBuilding reference seed array... [1.623s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.414s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.859s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 2/16, index chunk 1/4.\nBuilding reference seed array... [1.744s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.804s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 2/16, index chunk 2/4.\nBuilding reference seed array... [1.845s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.769s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 2/16, index chunk 3/4.\nBuilding reference seed array... [1.888s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.767s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 2/16, index chunk 4/4.\nBuilding reference seed array... [1.727s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.392s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 3/16, index chunk 1/4.\nBuilding reference seed array... [1.746s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.416s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.867s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 3/16, index chunk 2/4.\nBuilding reference seed array... [1.806s]\nBuilding query seed array... [0.092s]\nComputing hash join... [0.437s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.858s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 3/16, index chunk 3/4.\nBuilding reference seed array... [1.681s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.425s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.864s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 3/16, index chunk 4/4.\nBuilding reference seed array... [1.393s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.409s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.852s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 4/16, index chunk 1/4.\nBuilding reference seed array... [1.67s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.803s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 4/16, index chunk 2/4.\nBuilding reference seed array... [1.789s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.405s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.798s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 4/16, index chunk 3/4.\nBuilding reference seed array... [1.852s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.801s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 4/16, index chunk 4/4.\nBuilding reference seed array... [1.627s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.818s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 5/16, index chunk 1/4.\nBuilding reference seed array... [1.672s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.835s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 5/16, index chunk 2/4.\nBuilding reference seed array... [1.82s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.799s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 5/16, index chunk 3/4.\nBuilding reference seed array... [1.788s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 5/16, index chunk 4/4.\nBuilding reference seed array... [1.613s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.786s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 6/16, index chunk 1/4.\nBuilding reference seed array... [1.73s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.817s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 6/16, index chunk 2/4.\nBuilding reference seed array... [1.769s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.863s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 6/16, index chunk 3/4.\nBuilding reference seed array... [1.893s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.4s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.819s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 6/16, index chunk 4/4.\nBuilding reference seed array... [1.624s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.762s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 7/16, index chunk 1/4.\nBuilding reference seed array... [1.748s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.398s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.811s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 7/16, index chunk 2/4.\nBuilding reference seed array... [1.815s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.773s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 7/16, index chunk 3/4.\nBuilding reference seed array... [1.832s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.384s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.789s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 7/16, index chunk 4/4.\nBuilding reference seed array... [1.722s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.401s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.809s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 8/16, index chunk 1/4.\nBuilding reference seed array... [1.728s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.395s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.76s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 8/16, index chunk 2/4.\nBuilding reference seed array... [1.772s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.801s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 8/16, index chunk 3/4.\nBuilding reference seed array... [1.829s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.394s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.759s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 8/16, index chunk 4/4.\nBuilding reference seed array... [1.696s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.403s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.804s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 9/16, index chunk 1/4.\nBuilding reference seed array... [1.744s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.407s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.819s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 9/16, index chunk 2/4.\nBuilding reference seed array... [1.554s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.404s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.828s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 9/16, index chunk 3/4.\nBuilding reference seed array... [1.832s]\nBuilding query seed array... [0.092s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.81s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 9/16, index chunk 4/4.\nBuilding reference seed array... [1.677s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.408s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.845s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 10/16, index chunk 1/4.\nBuilding reference seed array... [1.759s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 10/16, index chunk 2/4.\nBuilding reference seed array... [1.806s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.381s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.78s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 10/16, index chunk 3/4.\nBuilding reference seed array... [1.823s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.782s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 10/16, index chunk 4/4.\nBuilding reference seed array... [1.66s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.391s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.803s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 11/16, index chunk 1/4.\nBuilding reference seed array... [1.766s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.815s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 11/16, index chunk 2/4.\nBuilding reference seed array... [1.769s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.393s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.829s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 11/16, index chunk 3/4.\nBuilding reference seed array... [1.84s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.397s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.781s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 11/16, index chunk 4/4.\nBuilding reference seed array... [1.663s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.406s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.8s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 12/16, index chunk 1/4.\nBuilding reference seed array... [1.683s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.851s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 12/16, index chunk 2/4.\nBuilding reference seed array... [1.817s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.81s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 12/16, index chunk 3/4.\nBuilding reference seed array... [1.781s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.788s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 12/16, index chunk 4/4.\nBuilding reference seed array... [1.622s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.385s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.911s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 13/16, index chunk 1/4.\nBuilding reference seed array... [1.818s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.387s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.855s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 13/16, index chunk 2/4.\nBuilding reference seed array... [1.829s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.765s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 13/16, index chunk 3/4.\nBuilding reference seed array... [1.89s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.755s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 13/16, index chunk 4/4.\nBuilding reference seed array... [1.588s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.75s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 14/16, index chunk 1/4.\nBuilding reference seed array... [1.643s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.816s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 14/16, index chunk 2/4.\nBuilding reference seed array... [1.775s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.748s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 14/16, index chunk 3/4.\nBuilding reference seed array... [1.829s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.752s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 14/16, index chunk 4/4.\nBuilding reference seed array... [1.642s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.768s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 15/16, index chunk 1/4.\nBuilding reference seed array... [1.751s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.399s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.846s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 15/16, index chunk 2/4.\nBuilding reference seed array... [1.853s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.389s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.843s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 15/16, index chunk 3/4.\nBuilding reference seed array... [1.79s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.396s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.775s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 15/16, index chunk 4/4.\nBuilding reference seed array... [1.678s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.406s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.808s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 16/16, index chunk 1/4.\nBuilding reference seed array... [1.707s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.798s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 16/16, index chunk 2/4.\nBuilding reference seed array... [1.866s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.39s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.802s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 16/16, index chunk 3/4.\nBuilding reference seed array... [1.91s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.381s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.745s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 4/5, shape 16/16, index chunk 4/4.\nBuilding reference seed array... [1.62s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.386s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.752s]\nDeallocating memory... [0s]\nDeallocating buffers... [0.423s]\nClearing query masking... [0.03s]\nOpening temporary output file... [0s]\nComputing alignments... Loading trace points... [3.406s]\nSorting trace points... [0.56s]\nComputing alignments... [7.087s]\nDeallocating buffers... [0.091s]\nLoading trace points... [0s]\n [11.406s]\nDeallocating reference... [0.137s]\nLoading reference sequences... [3.709s]\nMasking reference... [5.13s]\nInitializing dictionary... [0.019s]\nInitializing temporary storage... [0s]\nBuilding reference histograms... [12.197s]\nAllocating buffers... [0.006s]\nProcessing query block 1, reference block 5/5, shape 1/16, index chunk 1/4.\nBuilding reference seed array... [1.759s]\nBuilding query seed array... [0.094s]\nComputing hash join... [0.392s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.92s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 1/16, index chunk 2/4.\nBuilding reference seed array... [1.795s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.863s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 1/16, index chunk 3/4.\nBuilding reference seed array... [1.744s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.38s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.814s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 1/16, index chunk 4/4.\nBuilding reference seed array... [1.554s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.388s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.803s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 2/16, index chunk 1/4.\nBuilding reference seed array... [1.66s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.36s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.73s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 2/16, index chunk 2/4.\nBuilding reference seed array... [1.71s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.356s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.697s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 2/16, index chunk 3/4.\nBuilding reference seed array... [1.666s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.359s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.723s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 2/16, index chunk 4/4.\nBuilding reference seed array... [1.485s]\nBuilding query seed array... [0.079s]\nComputing hash join... [0.355s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.692s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 3/16, index chunk 1/4.\nBuilding reference seed array... [1.648s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.385s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.83s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 3/16, index chunk 2/4.\nBuilding reference seed array... [1.744s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.376s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.783s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 3/16, index chunk 3/4.\nBuilding reference seed array... [1.749s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.381s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.778s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 3/16, index chunk 4/4.\nBuilding reference seed array... [1.531s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.383s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.866s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 4/16, index chunk 1/4.\nBuilding reference seed array... [1.698s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.374s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.822s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 4/16, index chunk 2/4.\nBuilding reference seed array... [1.738s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.382s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.751s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 4/16, index chunk 3/4.\nBuilding reference seed array... [1.823s]\nBuilding query seed array... [0.089s]\nComputing hash join... [0.377s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.779s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 4/16, index chunk 4/4.\nBuilding reference seed array... [1.555s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.373s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.766s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 5/16, index chunk 1/4.\nBuilding reference seed array... [1.639s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.36s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.741s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 5/16, index chunk 2/4.\nBuilding reference seed array... [1.691s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.367s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.733s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 5/16, index chunk 3/4.\nBuilding reference seed array... [1.787s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.366s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.739s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 5/16, index chunk 4/4.\nBuilding reference seed array... [1.579s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.362s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.699s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 6/16, index chunk 1/4.\nBuilding reference seed array... [1.59s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.367s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.748s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 6/16, index chunk 2/4.\nBuilding reference seed array... [1.719s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.369s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.755s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 6/16, index chunk 3/4.\nBuilding reference seed array... [1.743s]\nBuilding query seed array... [0.09s]\nComputing hash join... [0.364s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.723s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 6/16, index chunk 4/4.\nBuilding reference seed array... [1.546s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.365s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.732s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 7/16, index chunk 1/4.\nBuilding reference seed array... [1.579s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.371s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.722s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 7/16, index chunk 2/4.\nBuilding reference seed array... [1.605s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.362s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.687s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 7/16, index chunk 3/4.\nBuilding reference seed array... [1.747s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.357s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.735s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 7/16, index chunk 4/4.\nBuilding reference seed array... [1.572s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.362s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.717s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 8/16, index chunk 1/4.\nBuilding reference seed array... [1.659s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.366s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.739s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 8/16, index chunk 2/4.\nBuilding reference seed array... [1.697s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.369s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.724s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 8/16, index chunk 3/4.\nBuilding reference seed array... [1.684s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.363s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.723s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 8/16, index chunk 4/4.\nBuilding reference seed array... [1.512s]\nBuilding query seed array... [0.078s]\nComputing hash join... [0.362s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.719s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 9/16, index chunk 1/4.\nBuilding reference seed array... [1.605s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.372s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.743s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 9/16, index chunk 2/4.\nBuilding reference seed array... [1.717s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.373s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.765s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 9/16, index chunk 3/4.\nBuilding reference seed array... [1.798s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.37s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.777s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 9/16, index chunk 4/4.\nBuilding reference seed array... [1.567s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.379s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.807s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 10/16, index chunk 1/4.\nBuilding reference seed array... [1.644s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.36s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.74s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 10/16, index chunk 2/4.\nBuilding reference seed array... [1.692s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.356s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.684s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 10/16, index chunk 3/4.\nBuilding reference seed array... [1.699s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.357s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.71s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 10/16, index chunk 4/4.\nBuilding reference seed array... [1.469s]\nBuilding query seed array... [0.081s]\nComputing hash join... [0.354s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.695s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 11/16, index chunk 1/4.\nBuilding reference seed array... [1.525s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.369s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.729s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 11/16, index chunk 2/4.\nBuilding reference seed array... [1.644s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.362s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.74s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 11/16, index chunk 3/4.\nBuilding reference seed array... [1.604s]\nBuilding query seed array... [0.091s]\nComputing hash join... [0.368s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.742s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 11/16, index chunk 4/4.\nBuilding reference seed array... [1.607s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.367s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.776s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 12/16, index chunk 1/4.\nBuilding reference seed array... [1.629s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.36s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.763s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 12/16, index chunk 2/4.\nBuilding reference seed array... [1.705s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.357s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.709s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 12/16, index chunk 3/4.\nBuilding reference seed array... [1.767s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.363s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.738s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 12/16, index chunk 4/4.\nBuilding reference seed array... [1.547s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.364s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.707s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 13/16, index chunk 1/4.\nBuilding reference seed array... [1.646s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.359s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.712s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 13/16, index chunk 2/4.\nBuilding reference seed array... [1.687s]\nBuilding query seed array... [0.084s]\nComputing hash join... [0.354s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.699s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 13/16, index chunk 3/4.\nBuilding reference seed array... [1.688s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.352s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.714s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 13/16, index chunk 4/4.\nBuilding reference seed array... [1.554s]\nBuilding query seed array... [0.076s]\nComputing hash join... [0.353s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.76s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 14/16, index chunk 1/4.\nBuilding reference seed array... [1.648s]\nBuilding query seed array... [0.085s]\nComputing hash join... [0.361s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.752s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 14/16, index chunk 2/4.\nBuilding reference seed array... [1.699s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.361s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [1s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 14/16, index chunk 3/4.\nBuilding reference seed array... [1.908s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.36s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.885s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 14/16, index chunk 4/4.\nBuilding reference seed array... [1.624s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.364s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.759s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 15/16, index chunk 1/4.\nBuilding reference seed array... [1.592s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.372s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.74s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 15/16, index chunk 2/4.\nBuilding reference seed array... [1.677s]\nBuilding query seed array... [0.087s]\nComputing hash join... [0.366s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.746s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 15/16, index chunk 3/4.\nBuilding reference seed array... [1.768s]\nBuilding query seed array... [0.088s]\nComputing hash join... [0.367s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.802s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 15/16, index chunk 4/4.\nBuilding reference seed array... [1.626s]\nBuilding query seed array... [0.082s]\nComputing hash join... [0.361s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.749s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 16/16, index chunk 1/4.\nBuilding reference seed array... [1.634s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.355s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.704s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 16/16, index chunk 2/4.\nBuilding reference seed array... [1.706s]\nBuilding query seed array... [0.083s]\nComputing hash join... [0.35s]\nMasking low complexity seeds... [0.007s]\nSearching alignments... [0.697s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 16/16, index chunk 3/4.\nBuilding reference seed array... [1.771s]\nBuilding query seed array... [0.086s]\nComputing hash join... [0.368s]\nMasking low complexity seeds... [0.009s]\nSearching alignments... [0.721s]\nDeallocating memory... [0s]\nProcessing query block 1, reference block 5/5, shape 16/16, index chunk 4/4.\nBuilding reference seed array... [1.536s]\nBuilding query seed array... [0.08s]\nComputing hash join... [0.359s]\nMasking low complexity seeds... [0.008s]\nSearching alignments... [0.699s]\nDeallocating memory... [0s]\nDeallocating buffers... [0.303s]\nClearing query masking... [0.019s]\nOpening temporary output file... [0s]\nComputing alignments... Loading trace points... [3.032s]\nSorting trace points... [0.51s]\nComputing alignments... [6.785s]\nDeallocating buffers... [0.079s]\nLoading trace points... [0s]\n [10.529s]\nDeallocating reference... [0.127s]\nLoading reference sequences... [0s]\nDeallocating buffers... [0s]\nJoining output blocks... Loading dictionary... [0.015s]\nJoining output blocks... [1.717s]\n [1.733s]\nDeallocating queries... [0.038s]\nLoading query sequences... [0s]\nClosing the input file... [0s]\nClosing the output file... [0.038s]\nClosing the database... [0.006s]\nCleaning up... [0s]\nTotal time = 1146.63s\nReported 398811 pairwise alignments, 398811 HSPs.\n244502 queries aligned.\n' 10/23/2023 02:50:42 PM - humann.utilities - DEBUG: Using software: /usr/bin/cat 10/23/2023 02:50:42 PM - humann.utilities - INFO: Execute command: /usr/bin/cat /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/diamond_m8_i7fs464h 10/23/2023 02:50:42 PM - humann.humann - INFO: TIMESTAMP: Completed translated alignment : 1147 seconds 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments where percent identity is not a number: 0 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments where alignment length is not a number: 0 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments where E-value is not a number: 0 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments not included based on large e-value: 0 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments not included based on small percent identity: 12605 10/23/2023 02:50:46 PM - humann.utilities - DEBUG: Total alignments not included based on small query coverage: 325512 10/23/2023 02:50:46 PM - humann.search.blastx_coverage - INFO: Total alignments without coverage information: 0 10/23/2023 02:50:46 PM - humann.search.blastx_coverage - INFO: Total proteins in blastx output: 5847 10/23/2023 02:50:46 PM - humann.search.blastx_coverage - INFO: Total proteins without lengths: 0 10/23/2023 02:50:46 PM - humann.search.blastx_coverage - INFO: Proteins with coverage greater than threshold (50.0): 1335 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments where percent identity is not a number: 0 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments where alignment length is not a number: 0 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments where E-value is not a number: 0 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments not included based on large e-value: 0 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments not included based on small percent identity: 12605 10/23/2023 02:50:48 PM - humann.utilities - DEBUG: Total alignments not included based on small query coverage: 325512 10/23/2023 02:50:48 PM - humann.search.translated - DEBUG: Total translated alignments not included based on small subject coverage value: 30515 10/23/2023 02:50:49 PM - humann.humann - INFO: TIMESTAMP: Completed translated alignment post-processing : 6 seconds 10/23/2023 02:50:49 PM - humann.humann - INFO: Total bugs after translated alignment: 2 10/23/2023 02:50:49 PM - humann.humann - INFO: g__Anabaena.s__Anabaena_sp_CRKS33: 7452 hits unclassified: 39393 hits 10/23/2023 02:50:49 PM - humann.humann - INFO: Total gene families after translated alignment: 1830 10/23/2023 02:50:49 PM - humann.humann - INFO: Unaligned reads after translated alignment: 85.7033845049 % 10/23/2023 02:50:49 PM - humann.humann - INFO: Computing gene families ... 10/23/2023 02:50:49 PM - humann.quantify.families - DEBUG: Compute gene families 10/23/2023 02:50:49 PM - humann.store - INFO: Total gene families : 1830 g__Anabaena.s__Anabaena_sp_CRKS33 : 549 gene families unclassified : 1335 gene families 10/23/2023 02:50:59 PM - humann.humann - INFO: TIMESTAMP: Completed computing gene families : 10 seconds 10/23/2023 02:50:59 PM - humann.humann - INFO: Computing pathways abundance and coverage ... 10/23/2023 02:50:59 PM - humann.quantify.modules - DEBUG: Write flat reactions to pathways file for Minpath 10/23/2023 02:50:59 PM - humann.quantify.modules - INFO: Compute reaction scores for bug: g__Anabaena.s__Anabaena_sp_CRKS33 10/23/2023 02:51:00 PM - humann.quantify.modules - INFO: Run MinPath on g__Anabaena.s__Anabaena_sp_CRKS33 10/23/2023 02:51:00 PM - humann.quantify.modules - INFO: Compute reaction scores for bug: unclassified 10/23/2023 02:51:01 PM - humann.quantify.modules - INFO: Run MinPath on unclassified 10/23/2023 02:51:01 PM - humann.quantify.modules - INFO: Compute reaction scores for bug: all 10/23/2023 02:51:03 PM - humann.quantify.modules - INFO: Run MinPath on all 10/23/2023 02:51:03 PM - humann.utilities - DEBUG: Using python module : /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py 10/23/2023 02:51:03 PM - humann.utilities - DEBUG: Using python module : /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py 10/23/2023 02:51:03 PM - humann.utilities - DEBUG: Using python module : /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py 10/23/2023 02:51:03 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/python3.8 /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py -any /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpqypznucz -map /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpvchzmv2p -report /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpmi0ve3gk -details /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpbvujya1q -mps /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpppa7h9fq 10/23/2023 02:51:03 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/python3.8 /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py -any /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpj8pj9syk -map /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpvchzmv2p -report /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpxrte8e0t -details /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpqvn5jbhg -mps /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmp_xlvohbz 10/23/2023 02:51:03 PM - humann.utilities - INFO: Execute command: /home/hassan/miniconda3/envs/humann_env/bin/python3.8 /home/hassan/miniconda3/envs/humann_env/lib/python3.8/site-packages/humann/quantify/MinPath12hmp.py -any /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmp1_b39m9u -map /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpvchzmv2p -report /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpr3kyh1tv -details /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpc2gps7bi -mps /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2/tmpih0upebp 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway abundance for bug: g__Anabaena.s__Anabaena_sp_CRKS33 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway abundance for bug: unclassified 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway abundance for bug: all 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway coverage for bug: g__Anabaena.s__Anabaena_sp_CRKS33 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway coverage for bug: unclassified 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Compute pathway coverage for bug: all 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Print pathways _Abundance 10/23/2023 02:51:04 PM - humann.quantify.modules - DEBUG: Print pathways _Coverage 10/23/2023 02:51:04 PM - humann.humann - INFO: TIMESTAMP: Completed computing pathways : 5 seconds 10/23/2023 02:51:04 PM - humann.humann - INFO: Output files created: /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_genefamilies.tsv /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_pathabundance.tsv /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_pathcoverage.tsv 10/23/2023 02:51:04 PM - humann.utilities - DEBUG: Remove directory: /home/hassan/Desktop/bouy/withoutbypass/062615a_S9_L001_R1_001_humann_temp/tmp4es0apn2