#mpa_vJun23_CHOCOPhlAnSGB_202307
#/home/user112/software/micromamba/envs/metaphlan4/bin/metaphlan HEM-25-1.fq --input_type fastq --nproc 40 -t rel_ab_w_read_stats -o HEM-25.metaphlan --bowtie2out HEM-25.bowtie2out.txt
#40592682 reads processed
#SampleID	Metaphlan_Analysis
#estimated_reads_mapped_to_known_clades:33363735
#clade_name	clade_taxid	relative_abundance	coverage	estimated_number_of_reads_from_the_clade
k__Bacteria	2	100.0	12.21993	33363735
k__Bacteria|p__Firmicutes	2|1239	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria	2|1224	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli	2|1239|91061	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	2|1224|1236	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	2|1239|91061|186826	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales	2|1224|1236|91347	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae	2|1239|91061|186826|33958	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae	2|1224|1236|91347|543	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus	2|1239|91061|186826|33958|2742598	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia	2|1224|1236|91347|543|561	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus_reuteri	2|1239|91061|186826|33958|2742598|1598	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	2|1224|1236|91347|543|561|562	22.03563	2.69274	13316462
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus_reuteri|t__SGB7095	2|1239|91061|186826|33958|2742598|1598|	77.96437	9.52719	20047273
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__SGB10068	2|1224|1236|91347|543|561|562|	22.03563	2.69274	13316462