09/04/2020 09:09:32 PM - humann.humann - INFO: Running humann v3.0.0.alpha.3
09/04/2020 09:09:32 PM - humann.humann - INFO: Output files will be written to: /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output
09/04/2020 09:09:32 PM - humann.humann - INFO: Writing temp files to directory: /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1
09/04/2020 09:09:32 PM - humann.utilities - INFO: File ( /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/MH0006.fastq.gz ) is of format:  fastq.gz
09/04/2020 09:09:32 PM - humann.utilities - INFO: Decompressing gzipped file ...
09/04/2020 09:13:00 PM - humann.utilities - DEBUG: Check software, metaphlan, for required version, 3.0
09/04/2020 09:13:01 PM - humann.utilities - INFO: Using metaphlan version 3.0
09/04/2020 09:13:01 PM - humann.utilities - DEBUG: Check software, bowtie2, for required version, 2.2
09/04/2020 09:13:01 PM - humann.utilities - INFO: Using bowtie2 version 2.4
09/04/2020 09:13:01 PM - humann.humann - INFO: Search mode set to uniref90 because a uniref90 translated search database is selected
09/04/2020 09:13:01 PM - humann.utilities - DEBUG: Check software, diamond, for required version, 0.9.24
09/04/2020 09:13:01 PM - humann.utilities - INFO: Using diamond version 2.0.4
09/04/2020 09:13:01 PM - humann.config - INFO: 
Run config settings: 

DATABASE SETTINGS
nucleotide database folder = /home/ubuntu/humann_db/chocophlan
protein database folder = /home/ubuntu/humann_db/uniref
pathways database file 1 = /home/ubuntu/anaconda3/lib/python3.8/site-packages/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2
pathways database file 2 = /home/ubuntu/anaconda3/lib/python3.8/site-packages/humann/data/pathways/metacyc_pathways_structured_filtered
utility mapping database folder = /home/ubuntu/anaconda3/lib/python3.8/site-packages/humann/data/misc

RUN MODES
resume = False
verbose = False
bypass prescreen = False
bypass nucleotide index = False
bypass nucleotide search = False
bypass translated search = False
translated search = diamond
pick frames = off
threads = 1

SEARCH MODE
search mode = uniref90
nucleotide identity threshold = 0.0
translated identity threshold = 80.0

ALIGNMENT SETTINGS
bowtie2 options = --very-sensitive
diamond options = --top 1 --outfmt 6
evalue threshold = 1.0
prescreen threshold = 0.01
translated subject coverage threshold = 50.0
translated query coverage threshold = 90.0
nucleotide subject coverage threshold = 50.0
nucleotide query coverage threshold = 90.0

PATHWAYS SETTINGS
minpath = on
xipe = off
gap fill = on

INPUT AND OUTPUT FORMATS
input file format = fastq.gz
output file format = tsv
output max decimals = 10
remove stratified output = False
remove column description output = False
log level = DEBUG

09/04/2020 09:13:01 PM - humann.store - DEBUG: Initialize Alignments class instance to minimize memory use
09/04/2020 09:13:01 PM - humann.store - DEBUG: Initialize Reads class instance to minimize memory use
09/04/2020 09:13:19 PM - humann.humann - INFO: Load pathways database part 1: /home/ubuntu/anaconda3/lib/python3.8/site-packages/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2
09/04/2020 09:13:19 PM - humann.humann - INFO: Load pathways database part 2: /home/ubuntu/anaconda3/lib/python3.8/site-packages/humann/data/pathways/metacyc_pathways_structured_filtered
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Prevotella.s__Prevotella_copri : 52.22% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Butyrivibrio.s__Butyrivibrio_crossotus : 8.65% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Alistipes.s__Alistipes_putredinis : 5.28% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Phascolarctobacterium.s__Phascolarctobacterium_succinatutens : 3.72% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Faecalibacterium.s__Faecalibacterium_prausnitzii : 3.19% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_sp_CAG_530 : 2.54% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_dorei : 1.99% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Ruminococcus.s__Ruminococcus_bromii : 1.83% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_vulgatus : 1.76% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_95 : 1.66% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_eggerthii : 1.47% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Paraprevotella.s__Paraprevotella_xylaniphila : 1.44% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_83 : 0.95% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_inulinivorans : 0.88% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_eligens : 0.81% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_110 : 0.65% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Oscillibacter.s__Oscillibacter_sp_57_20 : 0.63% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Barnesiella.s__Barnesiella_intestinihominis : 0.63% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Anaerostipes.s__Anaerostipes_hadrus : 0.60% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Parabacteroides.s__Parabacteroides_distasonis : 0.58% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Odoribacter.s__Odoribacter_splanchnicus : 0.52% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Dorea.s__Dorea_longicatena : 0.49% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Coprococcus.s__Coprococcus_comes : 0.44% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Desulfovibrio.s__Desulfovibrio_piger : 0.40% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Coprobacter.s__Coprobacter_fastidiosus : 0.39% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_sp_CAG_274 : 0.38% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Agathobaculum.s__Agathobaculum_butyriciproducens : 0.37% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_hallii : 0.33% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_xylanisolvens : 0.28% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Ruminococcus.s__Ruminococcus_bicirculans : 0.26% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Blautia.s__Blautia_wexlerae : 0.25% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_intestinalis : 0.24% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Fusicatenibacter.s__Fusicatenibacter_saccharivorans : 0.23% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_uniformis : 0.23% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Collinsella.s__Collinsella_aerofaciens : 0.23% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Dorea.s__Dorea_formicigenerans : 0.21% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Gemmiger.s__Gemmiger_formicilis : 0.21% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_faecis : 0.20% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_sp_CAG_251 : 0.17% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_clarus : 0.16% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Slackia.s__Slackia_isoflavoniconvertens : 0.15% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Blautia.s__Ruminococcus_torques : 0.14% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Ruminococcus.s__Ruminococcus_sp_CAG_488 : 0.13% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_sp_CAG_309 : 0.12% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_caccae : 0.11% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Oscillibacter.s__Oscillibacter_sp_CAG_241 : 0.11% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Butyricimonas.s__Butyricimonas_virosa : 0.10% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Clostridium.s__Clostridium_sp_CAG_167 : 0.10% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Holdemanella.s__Holdemanella_biformis : 0.10% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Coprococcus.s__Coprococcus_catus : 0.10% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_hominis : 0.09% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_sp_CAG_38 : 0.09% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Parabacteroides.s__Parabacteroides_merdae : 0.08% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_ventriosum : 0.08% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Alistipes.s__Alistipes_shahii : 0.07% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Ruthenibacterium.s__Ruthenibacterium_lactatiformans : 0.07% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Lactobacillus.s__Lactobacillus_ruminis : 0.06% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_170 : 0.06% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Catenibacterium.s__Catenibacterium_mitsuokai : 0.06% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Alistipes.s__Alistipes_finegoldii : 0.05% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_238 : 0.05% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Intestinimonas.s__Intestinimonas_butyriciproducens : 0.05% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Victivallis.s__Victivallis_vadensis : 0.04% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Eubacterium.s__Eubacterium_ramulus : 0.04% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Blautia.s__Blautia_obeum : 0.04% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Clostridium.s__Clostridium_sp_CAG_411 : 0.03% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Sutterella.s__Sutterella_parvirubra : 0.03% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Candidatus_Gastranaerophilales_unclassified.s__Candidatus_Gastranaerophilales_bacterium : 0.03% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Collinsella.s__Collinsella_stercoris : 0.03% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bilophila.s__Bilophila_wadsworthia : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Lachnospiraceae_unclassified.s__Eubacterium_rectale : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Enorma.s__[Collinsella]_massiliensis : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Collinsella.s__Collinsella_intestinalis : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Flavonifractor.s__Flavonifractor_plautii : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bacteroides.s__Bacteroides_thetaiotaomicron : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Clostridium.s__Clostridium_sp_CAG_253 : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bifidobacterium.s__Bifidobacterium_longum : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Roseburia.s__Roseburia_sp_CAG_303 : 0.02% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Lawsonibacter.s__Lawsonibacter_asaccharolyticus : 0.01% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Bifidobacterium.s__Bifidobacterium_adolescentis : 0.01% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Found g__Streptococcus.s__Streptococcus_salivarius : 0.01% of mapped reads
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Total species selected from prescreen: 81
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Blautia.s__Blautia_wexlerae.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_hallii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Prevotella.s__Prevotella_copri_CAG_164.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bifidobacterium.s__Bifidobacterium_adolescentis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Ruminococcus.s__Ruminococcus_sp_CAG_488.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bilophila.s__Bilophila_wadsworthia.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Parabacteroides.s__Parabacteroides_distasonis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_170.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Streptococcus.s__Streptococcus_salivarius_CAG_79.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_sp_CAG_303.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Coprococcus.s__Coprococcus_catus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_xylanisolvens.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_inulinivorans.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Faecalibacterium.s__Faecalibacterium_prausnitzii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_eggerthii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Paraprevotella.s__Paraprevotella_xylaniphila.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_110.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_sp_CAG_530.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Butyricimonas.s__Butyricimonas_virosa.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Candidatus_Gastranaerophilales_unclassified.s__Candidatus_Gastranaerophilales_bacterium_HUM_9.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Ruminococcus.s__Ruminococcus_bromii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Dorea.s__Dorea_longicatena.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Holdemanella.s__Holdemanella_biformis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Butyrivibrio.s__Butyrivibrio_crossotus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Lawsonibacter.s__Lawsonibacter_asaccharolyticus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_sp_CAG_38.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Candidatus_Gastranaerophilales_unclassified.s__Candidatus_Gastranaerophilales_bacterium.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Ruthenibacterium.s__Ruthenibacterium_lactatiformans.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Agathobaculum.s__Agathobaculum_butyriciproducens.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Flavonifractor.s__Flavonifractor_plautii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Clostridium.s__Clostridium_sp_CAG_167.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Fusicatenibacter.s__Fusicatenibacter_saccharivorans.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Victivallis.s__Victivallis_vadensis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_ramulus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_95.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Ruminococcus.s__Ruminococcus_bicirculans.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Blautia.s__Blautia_obeum.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Oscillibacter.s__Oscillibacter_sp_CAG_241.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_dorei.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Intestinimonas.s__Intestinimonas_butyriciproducens.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Alistipes.s__Alistipes_finegoldii.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_caccae.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_clarus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_83.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_hominis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Coprobacter.s__Coprobacter_fastidiosus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Alistipes.s__Alistipes_putredinis_CAG_67.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_intestinalis_CAG_13.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_sp_CAG_251.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_sp_CAG_309.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Dorea.s__Dorea_formicigenerans.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Clostridium.s__Clostridium_sp_CAG_253.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Desulfovibrio.s__Desulfovibrio_piger.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Lactobacillus.s__Lactobacillus_ruminis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_faecis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Prevotella.s__Prevotella_copri.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Lachnospiraceae_unclassified.s__Eubacterium_rectale.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_hallii_CAG_12.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_eligens.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Lactobacillus.s__Lactobacillus_ruminis_CAG_367.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bifidobacterium.s__Bifidobacterium_longum_CAG_69.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_inulinivorans_CAG_15.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Phascolarctobacterium.s__Phascolarctobacterium_succinatutens.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_sp_CAG_274.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Streptococcus.s__Streptococcus_salivarius.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Blautia.s__Ruminococcus_torques.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Anaerostipes.s__Anaerostipes_hadrus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_vulgatus.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Gemmiger.s__Gemmiger_formicilis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_238.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Alistipes.s__Alistipes_putredinis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Clostridium.s__Clostridium_sp_CAG_411.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Roseburia.s__Roseburia_intestinalis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bifidobacterium.s__Bifidobacterium_longum.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Dorea.s__Dorea_longicatena_CAG_42.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_uniformis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_vulgatus_CAG_6.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Parabacteroides.s__Parabacteroides_merdae.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_eligens_CAG_72.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Bacteroides.s__Bacteroides_uniformis_CAG_3.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Eubacterium.s__Eubacterium_ventriosum.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Butyrivibrio.s__Butyrivibrio_crossotus_CAG_259.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Coprococcus.s__Coprococcus_comes.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Barnesiella.s__Barnesiella_intestinihominis.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Dorea.s__Dorea_formicigenerans_CAG_28.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Coprococcus.s__Coprococcus_comes_CAG_19.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - DEBUG: Adding file to database: g__Catenibacterium.s__Catenibacterium_mitsuokai.centroids.v296_201901.ffn.gz
09/04/2020 09:13:19 PM - humann.search.prescreen - INFO: Creating custom ChocoPhlAn database ........
09/04/2020 09:13:19 PM - humann.utilities - DEBUG: Using software: /usr/bin/gunzip
09/04/2020 09:13:19 PM - humann.utilities - INFO: Execute command: /usr/bin/gunzip -c /home/ubuntu/humann_db/chocophlan/g__Blautia.s__Blautia_wexlerae.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_hallii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Prevotella.s__Prevotella_copri_CAG_164.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bifidobacterium.s__Bifidobacterium_adolescentis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Ruminococcus.s__Ruminococcus_sp_CAG_488.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bilophila.s__Bilophila_wadsworthia.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Parabacteroides.s__Parabacteroides_distasonis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_170.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Streptococcus.s__Streptococcus_salivarius_CAG_79.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_sp_CAG_303.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Coprococcus.s__Coprococcus_catus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_xylanisolvens.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_inulinivorans.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Faecalibacterium.s__Faecalibacterium_prausnitzii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_eggerthii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Paraprevotella.s__Paraprevotella_xylaniphila.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_110.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_sp_CAG_530.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Butyricimonas.s__Butyricimonas_virosa.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Candidatus_Gastranaerophilales_unclassified.s__Candidatus_Gastranaerophilales_bacterium_HUM_9.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Ruminococcus.s__Ruminococcus_bromii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Dorea.s__Dorea_longicatena.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Holdemanella.s__Holdemanella_biformis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Butyrivibrio.s__Butyrivibrio_crossotus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Lawsonibacter.s__Lawsonibacter_asaccharolyticus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_sp_CAG_38.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Candidatus_Gastranaerophilales_unclassified.s__Candidatus_Gastranaerophilales_bacterium.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Ruthenibacterium.s__Ruthenibacterium_lactatiformans.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Agathobaculum.s__Agathobaculum_butyriciproducens.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Flavonifractor.s__Flavonifractor_plautii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Clostridium.s__Clostridium_sp_CAG_167.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Fusicatenibacter.s__Fusicatenibacter_saccharivorans.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Victivallis.s__Victivallis_vadensis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_ramulus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_95.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Ruminococcus.s__Ruminococcus_bicirculans.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Blautia.s__Blautia_obeum.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Oscillibacter.s__Oscillibacter_sp_CAG_241.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_dorei.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Intestinimonas.s__Intestinimonas_butyriciproducens.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Alistipes.s__Alistipes_finegoldii.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_caccae.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_clarus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_83.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_hominis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Coprobacter.s__Coprobacter_fastidiosus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Alistipes.s__Alistipes_putredinis_CAG_67.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_intestinalis_CAG_13.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_sp_CAG_251.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_sp_CAG_309.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Dorea.s__Dorea_formicigenerans.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Clostridium.s__Clostridium_sp_CAG_253.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Desulfovibrio.s__Desulfovibrio_piger.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Lactobacillus.s__Lactobacillus_ruminis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_faecis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Prevotella.s__Prevotella_copri.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Lachnospiraceae_unclassified.s__Eubacterium_rectale.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_hallii_CAG_12.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_eligens.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Lactobacillus.s__Lactobacillus_ruminis_CAG_367.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bifidobacterium.s__Bifidobacterium_longum_CAG_69.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_inulinivorans_CAG_15.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Phascolarctobacterium.s__Phascolarctobacterium_succinatutens.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_sp_CAG_274.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Streptococcus.s__Streptococcus_salivarius.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Blautia.s__Ruminococcus_torques.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Anaerostipes.s__Anaerostipes_hadrus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Gemmiger.s__Gemmiger_formicilis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Firmicutes_unclassified.s__Firmicutes_bacterium_CAG_238.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Alistipes.s__Alistipes_putredinis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Clostridium.s__Clostridium_sp_CAG_411.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Roseburia.s__Roseburia_intestinalis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bifidobacterium.s__Bifidobacterium_longum.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Dorea.s__Dorea_longicatena_CAG_42.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_uniformis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_vulgatus_CAG_6.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Parabacteroides.s__Parabacteroides_merdae.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_eligens_CAG_72.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Bacteroides.s__Bacteroides_uniformis_CAG_3.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Eubacterium.s__Eubacterium_ventriosum.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Butyrivibrio.s__Butyrivibrio_crossotus_CAG_259.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Coprococcus.s__Coprococcus_comes.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Barnesiella.s__Barnesiella_intestinihominis.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Dorea.s__Dorea_formicigenerans_CAG_28.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Coprococcus.s__Coprococcus_comes_CAG_19.centroids.v296_201901.ffn.gz /home/ubuntu/humann_db/chocophlan/g__Catenibacterium.s__Catenibacterium_mitsuokai.centroids.v296_201901.ffn.gz
09/04/2020 09:13:23 PM - humann.humann - INFO: TIMESTAMP: Completed 	custom database creation 	:	 4	 seconds
09/04/2020 09:13:23 PM - humann.search.nucleotide - INFO: Running bowtie2-build ........
09/04/2020 09:13:23 PM - humann.utilities - DEBUG: Using software: /home/ubuntu/anaconda3/bin/bowtie2-build
09/04/2020 09:13:23 PM - humann.utilities - INFO: Execute command: /home/ubuntu/anaconda3/bin/bowtie2-build -f /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1/MH0006_custom_chocophlan_database.ffn /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1/MH0006_bowtie2_index
09/04/2020 09:25:01 PM - humann.humann - INFO: TIMESTAMP: Completed 	database index 	:	 698	 seconds
09/04/2020 09:25:01 PM - humann.search.nucleotide - DEBUG: Nucleotide input file is of type: fastq
09/04/2020 09:25:01 PM - humann.utilities - DEBUG: Using software: /home/ubuntu/anaconda3/bin/bowtie2
09/04/2020 09:25:01 PM - humann.utilities - INFO: Execute command: /home/ubuntu/anaconda3/bin/bowtie2 -q -x /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1/MH0006_bowtie2_index -U /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1/tmpmiu1aio0/tmp7oxi5tgr -S /home/ubuntu/data/Desktop/prjeb2054_control/kneaddata_output/deconta/humann_output/MH0006_humann_temp_q3zxbap1/MH0006_bowtie2_aligned.sam --very-sensitive
09/05/2020 12:32:44 AM - humann.utilities - DEBUG: b'161115185 reads; of these:\n  161115185 (100.00%) were unpaired; of these:\n    90387020 (56.10%) aligned 0 times\n    27922885 (17.33%) aligned exactly 1 time\n    42805280 (26.57%) aligned >1 times\n43.90% overall alignment rate\n'
09/05/2020 12:32:44 AM - humann.humann - INFO: TIMESTAMP: Completed 	nucleotide alignment 	:	 11263	 seconds
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments where percent identity is not a number: 0
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments where alignment length is not a number: 0
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments where E-value is not a number: 0
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments not included based on large e-value: 0
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments not included based on small percent identity: 0
09/05/2020 01:16:50 AM - humann.utilities - DEBUG: Total alignments not included based on small query coverage: 0
09/05/2020 01:16:50 AM - humann.search.blastx_coverage - INFO: Total alignments without coverage information: 0
09/05/2020 01:16:50 AM - humann.search.blastx_coverage - INFO: Total proteins in blastx output: 251649
09/05/2020 01:16:50 AM - humann.search.blastx_coverage - INFO: Total proteins without lengths: 0
09/05/2020 01:16:50 AM - humann.search.blastx_coverage - INFO: Proteins with coverage greater than threshold (50.0): 191581