# Producing figures and quantifying HGT

**URL:** <https://forum.biobakery.org/t/producing-figures-and-quantifying-hgt/7233>\
**Category:** WAAFLE\
**Created:** [July 5, 2024, 10:06am UTC](https://forum.biobakery.org/t/producing-figures-and-quantifying-hgt/7233 "2024-07-05T10:06:43Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Jack\_Lynch](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/jack_lynch/32/2914_2.png) [@Jack\_Lynch](https://forum.biobakery.org/u/Jack_Lynch)\
**Post date:** [July 5, 2024, 10:06am UTC](https://forum.biobakery.org/t/producing-figures-and-quantifying-hgt/7233/1 "2024-07-05T10:06:43Z")

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After running a number of shotgun samples through WAAFLE I now have the desired outputs- can I ask how I go about formatting these to produce plots similar to Figure 3 and Figure 5D. How do I extract the desired information from the seperate sample output files to create inputs for data analysis to compare different groups of samples? Sorry if this is a rudementary inquiry