# Humans database

**URL:** <https://forum.biobakery.org/t/humans-database/6225>\
**Category:** HUMAnN\
**Created:** [November 20, 2023, 4:04pm UTC](https://forum.biobakery.org/t/humans-database/6225 "2023-11-20T16:04:08Z")\
**Posts on this page:** 16\
**Page:** 1

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**Author:** ![caizhangbin](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/caizhangbin/32/2537_2.png) [@caizhangbin](https://forum.biobakery.org/u/caizhangbin)\
**Post date:** [November 20, 2023, 4:04pm UTC](https://forum.biobakery.org/t/humans-database/6225/1 "2023-11-20T16:04:08Z")

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hello, I have difficulty downloading the humann database:  
humann\_databases --download chocophlan full /lustre04/scratch/zhangbin/chocophlan2/chocophlan --update-config yes  
Download URL: [http://huttenhower.sph.harvard.edu/humann\_data/chocophlan/full\_chocophlan.v201901\_v31.tar.gz](http://huttenhower.sph.harvard.edu/humann_data/chocophlan/full_chocophlan.v201901_v31.tar.gz)  
CRITICAL ERROR: Unable to download and extract from URL: [http://huttenhower.sph.harvard.edu/humann\_data/chocophlan/full\_chocophlan.v201901\_v31.tar.gz](http://huttenhower.sph.harvard.edu/humann_data/chocophlan/full_chocophlan.v201901_v31.tar.gz)  
I am also confused, isn’t vOct22 the newest one? can humann v3.8 and metaphlan v4.0.6 (1 Mar 2023) still support this v201901 database?

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**Author:** ![d4straub](https://avatars.discourse-cdn.com/v4/letter/d/35a633/32.png) [@d4straub](https://forum.biobakery.org/u/d4straub)\
**Post date:** [November 20, 2023, 4:20pm UTC](https://forum.biobakery.org/t/humans-database/6225/2 "2023-11-20T16:20:11Z")

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Have the same problem, database files seem to be not accessible. Would be nice to get an approximation when that might work again.

Such as [http://huttenhower.sph.harvard.edu/humann\_data/uniprot/uniref\_annotated/uniref90\_DEMO\_diamond\_v201901b.tar.gz](http://huttenhower.sph.harvard.edu/humann_data/uniprot/uniref_annotated/uniref90_DEMO_diamond_v201901b.tar.gz) or

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**Author:** ![d4straub](https://avatars.discourse-cdn.com/v4/letter/d/35a633/32.png) [@d4straub](https://forum.biobakery.org/u/d4straub)\
**Post date:** [November 21, 2023, 8:35am UTC](https://forum.biobakery.org/t/humans-database/6225/3 "2023-11-21T08:35:59Z")

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Update: seems to work or me now again.

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**Author:** ![franzosa](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/franzosa/32/3511_2.png) [@franzosa](https://forum.biobakery.org/u/franzosa)\
**Post date:** [November 29, 2023, 6:50pm UTC](https://forum.biobakery.org/t/humans-database/6225/4 "2023-11-29T18:50:23Z")

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Thanks for the updates here. We’ve been doing work behind the scenes to try to make the downloads faster and more stable, but there might be some growing pains in that effort. Let us know if things aren’t working!

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**Author:** ![Divya](https://avatars.discourse-cdn.com/v4/letter/d/13edae/32.png) [@Divya](https://forum.biobakery.org/u/Divya)\
**Post date:** [December 12, 2024, 12:11am UTC](https://forum.biobakery.org/t/humans-database/6225/5 "2024-12-12T00:11:50Z")

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Hi, I am unable to download the databases, I am getting critical error  
CRITICAL ERROR: Unable to download and extract from URL: [http://huttenhower.sph.harvard.edu/humann\_data/chocophlan/full\_chocophlan.v201901\_v31.tar.gz](http://huttenhower.sph.harvard.edu/humann_data/chocophlan/full_chocophlan.v201901_v31.tar.gz)  
I tried it with the wget command aswell but was unable to download it.

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**Author:** ![sjohnson](https://avatars.discourse-cdn.com/v4/letter/s/71c47a/32.png) [@sjohnson](https://forum.biobakery.org/u/sjohnson)\
**Post date:** [December 13, 2024, 10:17pm UTC](https://forum.biobakery.org/t/humans-database/6225/6 "2024-12-13T22:17:09Z")

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These links all appear to be down for me as well.

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**Author:** ![franzosa](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/franzosa/32/3511_2.png) [@franzosa](https://forum.biobakery.org/u/franzosa)\
**Post date:** [January 2, 2025, 5:27pm UTC](https://forum.biobakery.org/t/humans-database/6225/7 "2025-01-02T17:27:57Z")

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Getting caught up here. Has this been resolved? Sometimes there are disruptions in our hosting during maintenance periods at Harvard Research Computing.

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**Author:** ![kbowie](https://avatars.discourse-cdn.com/v4/letter/k/a5b964/32.png) [@kbowie](https://forum.biobakery.org/u/kbowie)\
**Post date:** [March 22, 2025, 9:35pm UTC](https://forum.biobakery.org/t/humans-database/6225/8 "2025-03-22T21:35:55Z")

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Hello!

Similar to others in the thread, I tried downloading the UniRef90 database and am getting a critical error. I’ll try again later today/tomorrow to see if things are down due to maintenance.

Thanks!

```auto
Download URL: http://huttenhower.sph.harvard.edu/humann_data/uniprot/uniref_annotated/uniref90_annotated_v201901b_full.tar.gz
CRITICAL ERROR: Unable to download and extract from URL: http://huttenhower.sph.harvard.edu/humann_data/uniprot/uniref_annotated/uniref90_anno
tated_v201901b_full.tar.gz

```

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**Author:** ![Asuddaby](https://avatars.discourse-cdn.com/v4/letter/a/4af34b/32.png) [@Asuddaby](https://forum.biobakery.org/u/Asuddaby)\
**Post date:** [April 11, 2025, 3:35pm UTC](https://forum.biobakery.org/t/humans-database/6225/9 "2025-04-11T15:35:12Z")

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Did this ever resolve for you? I have been hitting a similar issue for the last two weeks, and can’t seem to download.

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**Author:** ![franzosa](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/franzosa/32/3511_2.png) [@franzosa](https://forum.biobakery.org/u/franzosa)\
**Post date:** [April 18, 2025, 6:10pm UTC](https://forum.biobakery.org/t/humans-database/6225/10 "2025-04-18T18:10:16Z")

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We’re looking into this. It’s very common for our downloads to sporadically be unavailable due to maintenance, and people notice it because we get a lot of traffic. They definitely wouldn’t be down for weeks without us knowing though, so I’m wondering if there is some other issue here, e.g. a firewall from your institution blocking the download?

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**Author:** ![Yi\_KCL](https://avatars.discourse-cdn.com/v4/letter/y/ac91a4/32.png) [@Yi\_KCL](https://forum.biobakery.org/u/Yi_KCL)\
**Post date:** [June 3, 2025, 9:29pm UTC](https://forum.biobakery.org/t/humans-database/6225/11 "2025-06-03T21:29:54Z")

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Hi, I am trying to download the databases for HUMAN3, but the code provide on the github, and the code suggest previously on the page, neither works.

I have tried:

`wget https://g-227ca.190ebd.75bc.data.globus.org/humann_data/chocophlan/full_chocophlan.v201901_v31.tar.gz`

`humann_databases --download chocophlan full .`

I even cant access the url using my browser. I am wondering if the link for downloading the database have been changed? Look forward to any updates soon!

Thanks,  
Yi

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**Author:** ![franzosa](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/franzosa/32/3511_2.png) [@franzosa](https://forum.biobakery.org/u/franzosa)\
**Post date:** [June 3, 2025, 11:26pm UTC](https://forum.biobakery.org/t/humans-database/6225/12 "2025-06-03T23:26:53Z")

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Systems are down for maintenance Mon-Thurs this week, apologies!

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**Author:** ![Paul\_Zierep](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/paul_zierep/32/2364_2.png) [@Paul\_Zierep](https://forum.biobakery.org/u/Paul_Zierep)\
**Post date:** [June 4, 2025, 8:04am UTC](https://forum.biobakery.org/t/humans-database/6225/13 "2025-06-04T08:04:35Z")

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Once the servers are back up. What is the latest compatible version of Humann and Metaphlan DB ? Does the latest version of Humann (v201901 feels pretty old) work with mpa\_vJan25\_CHOCOPhlAnSGB\_202503 ?

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**Author:** ![Elena\_L\_Peredo](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/elena_l_peredo/32/3286_2.png) [@Elena\_L\_Peredo](https://forum.biobakery.org/u/Elena_L_Peredo)\
**Post date:** [June 11, 2025, 8:13pm UTC](https://forum.biobakery.org/t/humans-database/6225/14 "2025-06-11T20:13:47Z")

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Is the database back on line? I am having trouble accessing it still/

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**Author:** ![franzosa](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/franzosa/32/3511_2.png) [@franzosa](https://forum.biobakery.org/u/franzosa)\
**Post date:** [June 13, 2025, 7:38pm UTC](https://forum.biobakery.org/t/humans-database/6225/15 "2025-06-13T19:38:09Z")

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Yes, the maintenance window is over, so if you are still having trouble with the download then something else is amiss.

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**Author:** ![Elena\_L\_Peredo](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/elena_l_peredo/32/3286_2.png) [@Elena\_L\_Peredo](https://forum.biobakery.org/u/Elena_L_Peredo)\
**Post date:** [June 13, 2025, 7:59pm UTC](https://forum.biobakery.org/t/humans-database/6225/16 "2025-06-13T19:59:48Z")

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Awesome. Will retry today. Thank you!
