# Export2graphlan.py

**URL:** <https://forum.biobakery.org/t/export2graphlan-py/2021>\
**Category:** MetaPhlAn\
**Created:** [April 29, 2021, 6:30pm UTC](https://forum.biobakery.org/t/export2graphlan-py/2021 "2021-04-29T18:30:19Z")\
**Posts on this page:** 1\
**Page:** 1

<div class="post-metadata">

**Author:** ![Pascale](https://avatars.discourse-cdn.com/v4/letter/p/c67d28/32.png) [@Pascale](https://forum.biobakery.org/u/Pascale)\
**Post date:** [April 29, 2021, 6:30pm UTC](https://forum.biobakery.org/t/export2graphlan-py/2021/1 "2021-04-29T18:30:19Z")

</div>

export2graphlan.py --skip\_rows 1 -i merged\_abundance\_table\_reformatted.txt --tree merged\_abundance.tree.txt --annotation merged\_abundance.annot.txt --most\_abundant 100 --abundance\_threshold 1 --least\_biomarkers 10 --annotations 5,6 --external\_annotations 7 --min\_clade\_size 1  
There are duplicate taxa entries, please check the input file!

I did the files merged\_abundance\_table\_reformatted.txt as the tutorial described.

```auto
tail -n +2 merged_abundance_table.txt | cut -f1,3- > merged_abundance_table_reformatted.txt

```

cat merged\_abundance\_table\_reformatted.txt |cut -f1|sort|uniq -c

All my taxas are unique.

Thanks