# All paired-end read unmatched

**URL:** <https://forum.biobakery.org/t/all-paired-end-read-unmatched/2895>\
**Category:** KneadData\
**Created:** [December 13, 2021, 1:29am UTC](https://forum.biobakery.org/t/all-paired-end-read-unmatched/2895 "2021-12-13T01:29:42Z")\
**Posts on this page:** 1\
**Showing post:** 36

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**Author:** ![weichi](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.biobakery.org/weichi/32/3118_2.png) [@weichi](https://forum.biobakery.org/u/weichi)\
**Post date:** [December 25, 2024, 3:32am UTC](https://forum.biobakery.org/t/all-paired-end-read-unmatched/2895/36 "2024-12-25T03:32:42Z")

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Here is the installation command based on @EacoChen’s comment, which resolved this issue in my case:  
Note. I installed Trimmomatic, TRF, Bowtie2, and FastQC by myself, and the commit of KneadData I am using is 90c05f3cd25a8c74a4d804f27dd0ce52718007d8.

```auto
git clone https://github.com/biobakery/kneaddata \
    && cd kneaddata \
    && git reset --hard ebc077999b7d020f666a11aec782119ab764e00f \
    && python3 setup.py install --bypass-dependencies-install

```

> [@All paired-end read unmatched](https://forum.biobakery.org/t/all-paired-end-read-unmatched/2895/31):
>
> The developer have solved this at Nov. 22th 2022 [https://github.com/biobakery/kneaddata/commit/ebc077999b7d020f666a11aec782119ab764e00f](https://github.com/biobakery/kneaddata/commit/ebc077999b7d020f666a11aec782119ab764e00f) But it seems like the didn’t make it a new release in github. You can set the envrionment by conda parameter with --only-deps, and git clone the kneaddata

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