The bioBakery help forum

Microbial community profiling   HUMAnN


Topic Replies Activity
About the Humann2 category 1 October 25, 2019
PCA loadings in publication 1 April 8, 2020
ValueError starting humann2 2 April 7, 2020
How to install Metaphlan2 legacy database 2 April 7, 2020
Issues with getting humann2 to run the example data 3 April 7, 2020
Can't call for metaphlan2.py 6 April 7, 2020
Getting HUMAnN2 and MetaPhlAn2 to run together 5 April 6, 2020
Query regarding HUMAnN2 3 April 6, 2020
Error when running command MinPath12hmp.py 6 April 3, 2020
Eukaryotic Uniref90 Gene Families in Gene Family TSV Files 21 April 2, 2020
Humann2 computation speed up 4 April 1, 2020
Kegg on Humann2 3 April 1, 2020
Humann2_renorm_table 2 April 1, 2020
How to use new database? (v201901) 2 March 16, 2020
Humann2_rename_table 3 February 21, 2020
Error with Humann2_barplot 5 February 20, 2020
Setting abundance percentage cutoff to 0. Confusing results 8 February 18, 2020
Genes.pep request 2 February 12, 2020
Low percentage of aligned reads 4 February 5, 2020
Unable to compute Kruskal-Wallis with feature humann2_associate 2 January 30, 2020
NCBI .fasta files are nucleotide sequence uninterrupted, but demos are broken up every 100 2 January 22, 2020
Is the renorm step affected by what samples are included together 2 January 17, 2020
Keeping all humann2 temp files 2 December 19, 2019
Loss of information when doing renorm then regroup 2 December 12, 2019
What about the new version of humann2 2 December 9, 2019
Same ID for paired-end reads 2 December 9, 2019
Uniref50s in humann2 output when using "--search-mode uniref90" 2 November 16, 2019