The bioBakery help forum

Microbial community profiling


StrainPhlAn Name: StrainPhlAn User manual || Tutorial PhyloPhlAn Name: PhyloPhlAn User manual || Tutorial PanPhlAn Name: PanPhlAn User manual || Tutorial MetaPhlAn2 Name: MetaPhlAn2 User manual || Tutorial PPANINI Name: PPANINI User manual || Tutorial WAAFLE Name: WAAFLE User manual || Tutorial ShortBRED Name: ShortBRED User manual || Tutorial MelonnPan Name: MelonnPan User manual || Tutorial PICRUSt Name: PICRUSt User manual || Tutorial HUMAnN2 Name: HUMAnN2 User manual || Tutorial
Topic Replies Activity
About the Microbial community profiling category 1 November 12, 2019
NCBI .fasta files are nucleotide sequence uninterrupted, but demos are broken up every 100 1 January 22, 2020
Is the renorm step affected by what samples are included together 2 January 17, 2020
Metabolite prediction using 16S taxonomic abundance data 2 January 16, 2020
Filtering out low-abundance taxa 1 January 13, 2020
Modifying metaphlan2 options in workflows 2 January 13, 2020
Detecting high abundance of mammalian MetaCyc pathways 5 January 9, 2020
ValueError starting humann2 1 January 4, 2020
Running a melonnpan tutorial 1 January 2, 2020
Issues with getting humann2 to run the example data 1 January 2, 2020
Question about PICRUSt 1 January 2, 2020
Error,Dependencies 3 December 31, 2019
Metabolic Prediction from Shotgun Sequences without Abundance 6 December 19, 2019
Keeping all humann2 temp files 2 December 19, 2019
Loss of information when doing renorm then regroup 2 December 12, 2019
What about the new version of humann2 2 December 9, 2019
Same ID for paired-end reads 2 December 9, 2019
Uniref50s in humann2 output when using "--search-mode uniref90" 2 November 16, 2019