The bioBakery help forum

Microbial community profiling


PhyloPhlAn Name: PhyloPhlAn User manual || Tutorial PPANINI Name: PPANINI User manual || Tutorial PanPhlAn Name: PanPhlAn User manual || Tutorial WAAFLE Name: WAAFLE User manual || Tutorial MelonnPan Name: MelonnPan User manual || Tutorial StrainPhlAn Name: StrainPhlAn User manual || Tutorial ShortBRED Name: ShortBRED User manual || Tutorial HUMAnN Name: HUMAnN User manual || Tutorial MetaPhlAn Name: MetaPhlAn User manual || Tutorial PICRUSt Name: PICRUSt User manual || Tutorial
Topic Replies Activity
About the Microbial community profiling category 1 November 12, 2019
question about unclassified 1 April 8, 2020
PCA loadings in publication 1 April 8, 2020
ValueError starting humann2 2 April 7, 2020
How to install Metaphlan2 legacy database 2 April 7, 2020
Issues with getting humann2 to run the example data 3 April 7, 2020
Can't call for metaphlan2.py 6 April 7, 2020
100 Unknown raw reads 4 April 7, 2020
Getting HUMAnN2 and MetaPhlAn2 to run together 5 April 6, 2020
Can you tell us about the db updates? 2 April 6, 2020
Metaphlan2 trial run result 2 April 6, 2020
Genome size normalization in Metaphlan2 2 April 6, 2020
Query regarding HUMAnN2 3 April 6, 2020
Unable to download metaphlan2 3 April 5, 2020
Relaxing classification parameters 1 April 3, 2020
Error when running command MinPath12hmp.py 6 April 3, 2020
Eukaryotic Uniref90 Gene Families in Gene Family TSV Files 21 April 2, 2020
Using KEGG data base in HUMAnN2 1 April 2, 2020
Humann2 computation speed up 4 April 1, 2020
Question about how to use Picrust 2 April 1, 2020
Kegg on Humann2 3 April 1, 2020
Creating markers after blasting 6 April 1, 2020
Humann2_renorm_table 2 April 1, 2020
How to use new database? (v201901) 2 March 16, 2020
Panphlan_pangenome_generation.py 1 March 31, 2020
Internet connection? 4 March 25, 2020
Error in ztransform 7 March 25, 2020
New version about PPANINI? 3 March 17, 2020
MelonnPan Input - Picrust2 output 2 March 16, 2020
Having issues with Strainphlan 10 March 16, 2020