Error occurred during initialization of VM: Trimmomatic
|
|
1
|
253
|
July 7, 2023
|
How to continue to download database from where it was disrupted
|
|
2
|
239
|
June 28, 2023
|
About TRF in kneaddata
|
|
6
|
1170
|
June 1, 2023
|
Bad id problem from bmtagger while running kneaddata v.0.7.10
|
|
2
|
2570
|
May 26, 2023
|
Lost majority of the reads after kneadata
|
|
1
|
529
|
May 24, 2023
|
Install KneadData in conda w/o Bowtie and Trimmomatic
|
|
0
|
287
|
May 11, 2023
|
Long ugly file names of output files by Kneaddata
|
|
7
|
568
|
April 1, 2023
|
Kneaddata- any options to checkpoint the runs and resume the runs
|
|
3
|
280
|
March 17, 2023
|
KneadData has error in bowtie2_discordant_pairs
|
|
0
|
532
|
March 11, 2023
|
Keaddata output is empty
|
|
0
|
280
|
March 3, 2023
|
Processing multiple files
|
|
3
|
516
|
March 2, 2023
|
Paired end data showing error on --bypass-trim option
|
|
12
|
1030
|
February 28, 2023
|
Save SAM outputs files
|
|
0
|
277
|
February 20, 2023
|
Interpreting read_count_table Numbers?
|
|
0
|
246
|
February 9, 2023
|
Questions about the read count table pulled from kneaddata logs
|
|
1
|
419
|
February 8, 2023
|
Kneaddata - a non very explicit error message
|
|
3
|
1077
|
February 2, 2023
|
There are less reads survived after kneaddata
|
|
5
|
892
|
January 23, 2023
|
Total reads after trimming is the SAME as Initial number of reads
|
|
0
|
220
|
January 5, 2023
|
[wmgx workflow] Discrepancy in total read counts between kneaddata and humann
|
|
3
|
325
|
December 15, 2022
|
Kneaddata paired reads?
|
|
0
|
285
|
December 8, 2022
|
Issue with KneadData database download
|
|
1
|
398
|
November 29, 2022
|
Kneaddata errors and output files
|
|
1
|
524
|
November 20, 2022
|
Metaphlan error after processing fastq using kneaddata v0.12.0
|
|
0
|
749
|
November 15, 2022
|
Custom database with multiple species
|
|
3
|
810
|
November 4, 2022
|
How can I expand the max amount of memory at running trimmomatic?
|
|
1
|
375
|
October 29, 2022
|
Choosing trim minimum length : would you share advice?
|
|
2
|
1016
|
October 22, 2022
|
MINLEN question
|
|
12
|
2503
|
October 21, 2022
|
Strange output for kneaddata
|
|
3
|
1095
|
October 17, 2022
|
Errors reported by TRF or bowtie2 (set - t - p parameters)
|
|
0
|
545
|
October 7, 2022
|
`pip install kneaddata` doesn't install dependencies
|
|
1
|
469
|
September 30, 2022
|