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About the Downstream analysis and statistics category
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0
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714
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November 12, 2019
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Unable to access the Galaxy module of lefse
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34
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3200
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April 17, 2024
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CLR vs LOG transform
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2
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63
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April 14, 2024
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TypeError: slice indices must be integers or None or have an __index__ method
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0
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52
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April 3, 2024
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Tutorial: AttributeError: 'NoneType' object has no attribute 'rownames'AttributeError: 'NoneType' object has no attribute 'rownames'
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2
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977
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April 11, 2024
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LEfSe issues and errors
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28
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2688
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March 19, 2024
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Update maaslin2 bioconda recipe
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2
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67
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April 3, 2024
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Selecting covariates in MaAsLin2 amidst absence of statistical differences in baseline characteristics
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2
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59
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April 2, 2024
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Maaslin2 for transcriptomic data
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1
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39
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April 1, 2024
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HALLA tool not providing hallagram / heatmap
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1
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43
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April 1, 2024
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Error occured in the dataset using Maslin2
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2
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122
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April 1, 2024
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Current Bioconductor version of Maaslin2 gives fatal error with random effects
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2
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76
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March 29, 2024
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P-value adjustment in MTX_model
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1
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44
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March 29, 2024
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Error while running MaAsLin: invalid 'lazy' to 'R_sparse_transpose'
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3
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118
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March 27, 2024
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No overlap between the two datasets
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1
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45
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March 20, 2024
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Differential abundance analysis of genes and pathways in metagenomics
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6
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512
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March 20, 2024
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Maaslin2: Subject ID as random effects error
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1
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64
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March 19, 2024
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Error running raxmlHPC
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1
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76
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March 19, 2024
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LEfSe: one-tailed or two-tailed p-values?
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0
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50
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March 17, 2024
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Interaction term missing from Maaslin2 output
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0
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59
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March 15, 2024
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Format input file for Lefse
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33
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1897
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March 7, 2024
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Normalization methods
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2
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104
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March 6, 2024
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Unnable to acces galaxy.biobakery.org - Proxy Error
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6
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404
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March 6, 2024
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Some features missed by maaslin in untargeted metabolomics and other LM/CPLM issues
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0
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33
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March 1, 2024
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Guide for normalization/transformation for Maaslin2 Input
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1
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143
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March 1, 2024
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CLR normalization for Metaphlan proportions
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1
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104
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March 1, 2024
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CLR transformation plots/model
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1
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63
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March 1, 2024
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Does a negative LDA score mean the abundance is less?
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0
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81
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March 1, 2024
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Error in Maaslin2(input_data = input_data, input_metadata = input_metadata, : Please provide the reference for the variable 'diagnosis' which includes more than 2 levels: UC, CD, nonIBD
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4
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2408
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February 23, 2024
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Formatting data for LEfSe
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2
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164
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February 20, 2024
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