The bioBakery help forum

Downstream analysis and statistics


HAllA Name: HAllA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial ARepA Name: ARepA User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial MaAsLin2 Name: MaAsLin2 User manual || Tutorial
Topic Replies Activity
About the Downstream analysis and statistics category 1 November 12, 2019
Count data preprocessing for HAllA 2 April 8, 2020
Hallagram does not work 2 April 7, 2020
Uncertainty about Execution time of Halla (As for my data it‘s much time-consuming) 2 April 7, 2020
Filtering of features by abundance 3 April 6, 2020
Confounding factors 8 April 3, 2020
Plotting issues 2 April 3, 2020
P-values not calculated when wilc = 0 1 March 30, 2020
Question regarding subclasses that span over classes 3 March 14, 2020
LefSe: what happens if no subclass 9 March 14, 2020
Lefse input file: how to set the experimental design 2 March 13, 2020
Installing Maaslin2 from Bioconductor 3 March 11, 2020
Multiple comparison correcting 2 March 7, 2020
Question about LEfSe input_format.py when specifing no subclass 1 March 5, 2020
Lefse without any subclass- still valid? 4 March 6, 2020
LEfSe input file question 9 February 28, 2020
HUMAnN2 input to LEfSe 1 February 27, 2020
Problem with LEfSe 5 February 25, 2020
Changing feature name changes results in LEfSe 1 February 14, 2020
Lefse on small sample size 2 February 5, 2020
Weird error in Maaslin2 6 February 5, 2020
Error using lefSe 2 January 22, 2020
Error running Maaslin2 4 January 9, 2020
Metadata Preparation for MaAsLin2 Input 2 January 2, 2020
Result issue for LEFSE 2 January 2, 2020
Question to your LEfSe 1 January 2, 2020